Agglomerates

Images need to be processed in ImageJ with the macro commands in this file: Macros file
More on running ImageJ macros can be found here: https://imagej.nih.gov/ij/developer/macro/macros.html#run.

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Choose a file from your system

Parameters

Select filter type:	Default Huang Triangle Intermodes IsoData IJ_IsoData Li MaxEntropy Mean Moments Otsu RenyiEntropy Shanbhag Watershed
Select function type:	Particle count and analysis Full image Analysis
pixel/nm:

Select Descriptors:

Angle

Area

Aspect Ratio

Circularity

Feret Angle

Grey Deviation

Integrated Density

Kurtosis

Major Axis

Max Grey Value

Mean Grey Value

Min Grey Value

Min Feret

Minor Axis

Modal Grey Value

Perimeter

Porosity

Roundness

Skeweness

Solidity

Sphericity

Surface Diameter

Volume

Volume to Surface

Results of this tool are derived from ImageJ, with additional descriptors provided, as described in:
Philip Doganis, Georgia Tsiliki, Haralambos Sarimveis, Haralambos Chomenidis, Georgios Drakakis, Egon Willighagen, Barry Hardy. (2015, April 29). Deliverable Report D4.2 Descriptor Calculation Algorithms and Methods. Zenodo. http://doi.org/10.5281/zenodo.375609